How to Set Up MFA in Microsoft 365 Using the Microsoft Authenticator Application

How to Set Up MFA in Microsoft 365 Using the Microsoft Authenticator Application

How to Set Up MFA in Microsoft 365 Using the Microsoft Authenticator Application





Each year, there are more cybersecurity threats, and one of the most common ways attackers gain access to company systems is through stolen or guessed passwords. Microsoft 365 requires MFA on all employee accounts in order to protect data integrity for employees.

This guide will walk you through what MFA is, why it's important, and how to set it up using the Microsoft Authenticator app on your smartphone.

 What is Multi-Factor Authentication?


Multi-Factor Authentication (MFA) is a security feature that adds an extra layer of protection in your login process. Rather than relying only on your password, it also requires you to verify your identity using a separate device, usually your smartphone.

That means that, even if someone manages to steal your password, they still cannot access your account without having your phone for login approval.

Why MFA Was Implemented


MFA protects sensitive data: it prevents unauthorized access to company files, emails, and systems.

Stops password-based attacks: More than 80% of breaches involve stolen or weak passwords. MFA stops these attacks cold.

Meets compliance standards: Several sectors and data protection laws, such as GDPR and ISO 27001, now require the use of MFA for cloud-based accounts.

It's simple, fast, and secure. Just set it up and logging in becomes as easy as tapping "Approve" on your phone.

What You’ll Need

Before you start, ensure that you have:

Your smartphone, either Android or iPhone

The Microsoft Authenticator app installed

To install Authenticator on your iOS device

Scan the QR code

iOS QR code to open the App Store



To install Authenticator on your Android device

Scan the QR code

Android QR code to open app store


Access to a computer where you can sign in to your Microsoft 365 account

Setup MFA in Microsoft 365 Step by Step


There are two ways you can set up MFA: manually set in on your account as an end user. Or upon sign in being prompted to set up MFA.

Via set up prompt:
Step 1: Log in to Microsoft 365 and 

On your computer, go to https://portal.office.com.

Sign in with your work email and password (e.g., yourname@yourcompany.com

If MFA setup is required, you'll see a message asking to set up additional security verification.

A dialog box telling you that more information is required to complete your sign-in

Click Next to start.

Step 2: Choose the Mobile App Option

On the setup screen, in “How should we contact you?”, select Mobile app.

Under “How do you want to use the mobile app?”, select:

Receive notifications for verification.

Click Set up — a QR code will appear on your screen.

Step 3: Set up the Microsoft Authenticator App

Open the Microsoft Authenticator application on your mobile device.

Tap the “+” or Add account button. ( located top right)

Select Work or school account.

Utilize the camera on your phone to scan the QR code shown on your computer screen.

If you can't scan the code, tap "Can't scan image?" and enter the code manually.

Once scanned, your account will appear in the app.

Step 4: Test the Connection

Click Next on your computer.

Microsoft will send a test sign-in request to your phone.

Open the Authenticator app and tap Approve.

Once added, you will see a confirmation message. Click Next again to complete.

Step 5: Add a Backup Method (Recommended)

To avoid being locked out in case you lose or replace your phone:

Add an alternate phone number to include such as work desk or secondary mobile.

In the Authenticator app, select Settings → Backup to enable cloud backup.

Step 6: Complete Setup

Once you have finished all steps:

Click Done to complete MFA setup.

The next time you log in, you’ll:

Enter your Microsoft 365 password.

You will receive a prompt on your phone to approve the sign-in.+

Via Manual set up:

Step 1: Log in to Microsoft 365 and 

On your computer, go to https://portal.office.com.

Sign in with your work email and password (e.g., yourname@yourcompany.com

Step 2: click on profile picture on the bottom left of the page

Select view your account

Step 3: open your security settings or password settings

Step 4: Select authenticator app

Click Set up — a QR code will appear on your screen.

Step 5: Set up the Microsoft Authenticator App

Open the Microsoft Authenticator application on your mobile device.

Tap the “+” or Add account button. ( located top right)

Select Work or school account.

Utilize the camera on your phone to scan the QR code shown on your computer screen.

If you can't scan the code, tap "Can't scan image?" and enter the code manually.

Once scanned, your account will appear in the app.

Step 6: Test the Connection

Click Next on your computer.

Microsoft will send a test sign-in request to your phone.

Open the Authenticator app and tap Approve.

Once added, you will see a confirmation message. Click Next again to complete.

Step 7: Add a Backup Method (Recommended)

To avoid being locked out in case you lose or replace your phone:

Add an alternate phone number to include such as work desk or secondary mobile.

In the Authenticator app, select Settings → Backup to enable cloud backup.

Step 8: Complete Setup

Once you have finished all steps:

Click Done to complete MFA setup.

The next time you log in, you’ll:

Enter your Microsoft 365 password.

You will receive a prompt on your phone to approve the sign-in.+


Troubleshooting Tips


Didn't get a notification?

Open the Microsoft Authenticator app. Sometimes it is waiting for your approval.

Changed or lost your phone? You can contact your IT department to reset your MFA setup. No smartphone? Your IT department will be able to facilitate an alternative (e.g., SMS verification). Overview: If you set up MFA, then you are helping keep both your account and the company's data safe. With just one tap on your phone, you add a robust layer of protection from hackers and cyber threats, and that's simple, quick, and secure. ** Remember: Your password protects your account. MFA protects your password.

 - Corey Gunter

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